PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022445P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 166aa    MW: 18045.7 Da    PI: 6.6274
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022445P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.4e-07444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e+ +++  C  ++  lC++C +e H        H++
  MELO3C022445P1  4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                    7*****************************65667777765 PP

2zf-B_box29.91.2e-095395238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + +kC+ +++k + +fC +++ l+C+dC + +H++      H+
  MELO3C022445P1 53 KLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSgslsanHQ 95
                    5799*****************************7667777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
CDDcd000215.18E-6347No hitNo description
PfamPF006431.1E-5444IPR000315B-box-type zinc finger
SMARTSM003368.9E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.935299IPR000315B-box-type zinc finger
SMARTSM003361.4E-135299IPR000315B-box-type zinc finger
PfamPF006431.9E-85395IPR000315B-box-type zinc finger
CDDcd000212.09E-65598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL STKLPKCDIC  60
QDKAAFIFCV EDRALFCQDC DEPIHSSGSL SANHQRFLAT GIRVAMSSSC TKDVDKVKME  120
PPNPKNPQVP AKVPSQQVPN FTSSWAVDDF LHFSDLESSD KVSKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841220.0EU284122.1 Cucumis sativus putative transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460039.11e-115PREDICTED: salt tolerance protein-like isoform X2
RefseqXP_008460038.11e-115PREDICTED: salt tolerance protein-like isoform X1
RefseqXP_008460037.11e-115PREDICTED: salt tolerance protein-like isoform X1
SwissprotQ962883e-74BBX24_ARATH; B-box zinc finger protein 24
TrEMBLE5GC891e-115E5GC89_CUCME; Salt-tolerance protein
STRINGGLYMA12G05570.15e-92(Glycine max)
STRINGGLYMA15G03400.15e-92(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.26e-77DBB family protein